Computational Biology Tools and Resources

Software

General

National Cancer Institute: NCI Resources, includes analysis tool, datasets, lab tools, and other resources.

Platforms

Huggingface Biological Model Collection

Galaxy: platform for data intensive science

Amazon Web Services: cloud compute from Amazon

Quality Assessment and Trimming

Alignment

Basic Local Alignment Search Tool (BLAST): Sequence local alignment search tool for finding regions of similarities.

Biomolecular Interaction Network Database (BIND): Molecular Interaction

Biology WorkBench: Analysis and Modeling tools

ClustalW: Sequence alignment

NCBI: National Center for Biotechnology Information

PDB: 3-D biological macromolecular structure data.

RNA Analysis

scRNA-tools: database of details of software tools designed for analysing scRNA-seq data

bcbio: RNA-seq and RNA analysis

Genomics

ADAM: Apache Spark library for genomic data analysis.

Arvados: platform for storing, organizing, processing and sharing genomics data at scale.

Study Materials

Lectures

Reference Books

Conferences

Inspirations and Collections

Version History

• Version history is not maintained for resources, lists, and tools.
• 06.11.2018 Initial draft.

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